[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 13,660 items for (author: yu & l)

EMDB-39368:
Extracellular domain of Vgamma5 Vdelta1 TCR (DeepEMhancer)
Method: single particle / : Xin W, Huang B, Chi X, Xu M, Zhang Y, Li X, Su Q, Zhou Q

EMDB-34992:
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens (UltrAuFoil)
Method: single particle / : Xiao J, Wang L

EMDB-39353:
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens
Method: single particle / : Xiao J, Wang L

PDB-8hsb:
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens (UltrAuFoil)
Method: single particle / : Xiao J, Wang L

PDB-8yjy:
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens
Method: single particle / : Xiao J, Wang L

EMDB-38752:
Cryo-EM structure of the human 40S ribosome with PDCD4
Method: single particle / : Ye X, Huang Z, Li Y, Wang M, Cheng J

EMDB-38753:
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Method: single particle / : Ye X, Huang Z, Li Y, Wang M, Cheng J

EMDB-38754:
Cryo-EM structure of the human 43S ribosome with PDCD4
Method: single particle / : Ye X, Huang Z, Li Y, Wang M, Cheng J

PDB-8xxl:
Cryo-EM structure of the human 40S ribosome with PDCD4
Method: single particle / : Ye X, Huang Z, Li Y, Wang M, Cheng J

PDB-8xxm:
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Method: single particle / : Ye X, Huang Z, Li Y, Wang M, Cheng J

PDB-8xxn:
Cryo-EM structure of the human 43S ribosome with PDCD4
Method: single particle / : Ye X, Huang Z, Li Y, Wang M, Cheng J

EMDB-38828:
Closed conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38829:
1up-1 conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38830:
1up-2 conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38831:
2up-1 conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38832:
2up-TM conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38833:
3up-TM conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38834:
The closed conformation of the HKU1-B S protein in the apo state
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38835:
The 1up conformation of the HKU1-B S protein in the apo state
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-38836:
The closed conformation of the HKU1-B S protein in the apo state
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y19:
Closed conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1a:
1up-1 conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1b:
1up-2 conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1c:
2up-1 conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1d:
2up-TM conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1e:
3up-TM conformation of HKU1-B S protein after incubation of the receptor
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1f:
The closed conformation of the HKU1-B S protein in the apo state
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1g:
The 1up conformation of the HKU1-B S protein in the apo state
Method: single particle / : Xia LY, Zhang YY, Zhou Q

PDB-8y1h:
The closed conformation of the HKU1-B S protein in the apo state
Method: single particle / : Xia LY, Zhang YY, Zhou Q

EMDB-37963:
Cryo-EM structure of the hamster prion 23-144 fibril at pH 3.7
Method: helical / : Lee CH, Saw JE, Chen E, Wang CH, Chen R

PDB-8wzx:
Cryo-EM structure of the hamster prion 23-144 fibril at pH 3.7
Method: helical / : Lee CH, Saw JE, Chen E, Wang CH, Chen R

EMDB-37342:
Structural mechanism of inhibition of the Rho transcription termination factor by Rof
Method: single particle / : Zhang J, Wang C

PDB-8w8d:
Structural mechanism of inhibition of the Rho transcription termination factor by Rof
Method: single particle / : Zhang J, Wang C

EMDB-36849:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Method: single particle / : Sun MM

PDB-8k3c:
Nipah virus Attachment glycoprotein with 41-6 antibody fragment
Method: single particle / : Sun MM

EMDB-36760:
Cryo-EM structure of conformation 1 of complex of Nipah virus attachment glycoprotein G with 1E5 neutralizing antibody
Method: single particle / : Sun MM

EMDB-36761:
Cryo-EM structure of conformation 2 of complex of Nipah virus attachment G with 1E5 neutralizing antibody
Method: single particle / : Sun M

EMDB-34495:
type I-B Cascade bound to a PAM-containing dsDNA target at 3.8 angstrom resolution.
Method: single particle / : Xiao Y, Lu M, Yu C, Zhang Y

PDB-8h67:
type I-B Cascade bound to a PAM-containing dsDNA target at 3.8 angstrom resolution.
Method: single particle / : Xiao Y, Lu M, Yu C, Zhang Y

EMDB-36779:
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 with 10-nt TRS at symmetric apo state
Method: single particle / : Zhu HZ, Liu JJG

EMDB-41314:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-41319:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-41321:
Structure of Gabija AB complex 1
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8tjy:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8tk0:
Structure of Gabija AB complex
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8tk1:
Structure of Gabija AB complex 1
Method: single particle / : Shen ZF, Yang XY, Fu TM

EMDB-18594:
Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs
Method: single particle / : Gao Y, Zhang Y, Hakke S, Peters PJ, Ravelli RBG

PDB-8qqk:
Cryo-EM structure of E. coli cytochrome bo3 quinol oxidase assembled in peptidiscs
Method: single particle / : Gao Y, Zhang Y, Hakke S, Peters PJ, Ravelli RBG

EMDB-43714:
Cryo-EM structure of VP3-VP6 heterohexamer
Method: single particle / : Xia X, Sung PY, Martynowycz MW, Gonen T, Roy P, Zhou ZH

EMDB-43716:
Cryo-EM structure of BTV star-subcore
Method: single particle / : Xia X, Sung PY, Martynowycz MW, Gonen T, Roy P, Zhou ZH

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more